WEB-based GEne SeT AnaLysis Toolkit
 
Translating gene lists into biological insights...
 


User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID. The second row lists the following statistics:
Finally, genes in the gene set are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:Transcription Target       Name:hsa_V$CEBPB_02       ID:DB_ID:1922
C=252; O=4; E=0.33; R=12.22; rawP=0.0003; adjP=0.0198
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000104812 NA GYS1 glycogen synthase 1 (muscle) 2997 ENSG00000104812
2  ENSG00000118971 NA CCND2 cyclin D2 894 ENSG00000118971
3  ENSG00000103569 NA AQP9 aquaporin 9 366 ENSG00000103569
4  ENSG00000163220 NA S100A9 S100 calcium binding protein A9 6280 ENSG00000163220


Database:Transcription Target       Name:hsa_V$CEBPB_01       ID:DB_ID:1916
C=258; O=3; E=0.34; R=8.95; rawP=0.0046; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000104812 NA GYS1 glycogen synthase 1 (muscle) 2997 ENSG00000104812
2  ENSG00000182885 NA GPR97 G protein-coupled receptor 97 222487 ENSG00000182885
3  ENSG00000183019 NA C19orf59 chromosome 19 open reading frame 59 199675 ENSG00000183019


Database:Transcription Target       Name:hsa_V$LMO2COM_01       ID:DB_ID:2034
C=260; O=3; E=0.34; R=8.89; rawP=0.0047; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000123405 NA NFE2 nuclear factor (erythroid-derived 2), 45kDa 4778 ENSG00000123405
2  ENSG00000159339 NA PADI4 peptidyl arginine deiminase, type IV 23569 ENSG00000159339
3  ENSG00000118971 NA CCND2 cyclin D2 894 ENSG00000118971


Database:Transcription Target       Name:hsa_V$LYF1_01       ID:DB_ID:1945
C=262; O=3; E=0.34; R=8.82; rawP=0.0048; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000163220 NA S100A9 S100 calcium binding protein A9 6280 ENSG00000163220
2  ENSG00000118520 NA ARG1 arginase, liver 383 ENSG00000118520
3  ENSG00000157551 NA KCNJ15 potassium inwardly-rectifying channel, subfamily J, member 15 3772 ENSG00000157551


Database:Transcription Target       Name:hsa_TGASTMAGC_V$NFE2_01       ID:DB_ID:2438
C=191; O=3; E=0.25; R=12.10; rawP=0.0020; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000100985 NA MMP9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) 4318 ENSG00000100985
2  ENSG00000159339 NA PADI4 peptidyl arginine deiminase, type IV 23569 ENSG00000159339
3  ENSG00000115607 NA IL18RAP interleukin 18 receptor accessory protein 8807 ENSG00000115607


Database:Transcription Target       Name:hsa_V$USF_02       ID:DB_ID:1926
C=269; O=3; E=0.35; R=8.59; rawP=0.0052; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000198960 NA ARMCX6 armadillo repeat containing, X-linked 6 54470 ENSG00000198960
2  ENSG00000126262 NA FFAR2 free fatty acid receptor 2 2867 ENSG00000126262
3  ENSG00000169019 NA COMMD8 COMM domain containing 8 54951 ENSG00000169019


Database:Transcription Target       Name:hsa_RYTTCCTG_V$ETS2_B       ID:DB_ID:2415
C=1074; O=6; E=1.39; R=4.30; rawP=0.0026; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000182885 NA GPR97 G protein-coupled receptor 97 222487 ENSG00000182885
2  ENSG00000100985 NA MMP9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) 4318 ENSG00000100985
3  ENSG00000163220 NA S100A9 S100 calcium binding protein A9 6280 ENSG00000163220
4  ENSG00000103313 NA MEFV Mediterranean fever 4210 ENSG00000103313
5  ENSG00000115607 NA IL18RAP interleukin 18 receptor accessory protein 8807 ENSG00000115607
6  ENSG00000119535 NA CSF3R colony stimulating factor 3 receptor (granulocyte) 1441 ENSG00000119535


Database:Transcription Target       Name:hsa_V$BACH2_01       ID:DB_ID:2141
C=268; O=3; E=0.35; R=8.62; rawP=0.0052; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000100985 NA MMP9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) 4318 ENSG00000100985
2  ENSG00000159339 NA PADI4 peptidyl arginine deiminase, type IV 23569 ENSG00000159339
3  ENSG00000163421 NA PROK2 prokineticin 2 60675 ENSG00000163421


Database:Transcription Target       Name:hsa_TATAAA_V$TATA_01       ID:DB_ID:2456
C=1276; O=7; E=1.66; R=4.22; rawP=0.0013; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000143546 NA S100A8 S100 calcium binding protein A8 6279 ENSG00000143546
2  ENSG00000153487 NA ING1 inhibitor of growth family, member 1 3621 ENSG00000153487
3  ENSG00000166527 NA CLEC4D C-type lectin domain family 4, member D 338339 ENSG00000166527
4  ENSG00000159339 NA PADI4 peptidyl arginine deiminase, type IV 23569 ENSG00000159339
5  ENSG00000163421 NA PROK2 prokineticin 2 60675 ENSG00000163421
6  ENSG00000163220 NA S100A9 S100 calcium binding protein A9 6280 ENSG00000163220
7  ENSG00000118113 NA MMP8 matrix metallopeptidase 8 (neutrophil collagenase) 4317 ENSG00000118113


Database:Transcription Target       Name:hsa_V$ISRE_01       ID:DB_ID:2029
C=246; O=3; E=0.32; R=9.39; rawP=0.0041; adjP=0.0343
Index UserID Value Gene Symbol Gene Name EntrezGene Ensembl
1  ENSG00000008516 NA MMP25 matrix metallopeptidase 25 64386 ENSG00000008516
2  ENSG00000163421 NA PROK2 prokineticin 2 60675 ENSG00000163421
3  ENSG00000198960 NA ARMCX6 armadillo repeat containing, X-linked 6 54470 ENSG00000198960




WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).